PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505413.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family M-type_MADS
Protein Properties Length: 363aa    MW: 40962.1 Da    PI: 7.0412
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505413.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF633.3e-202366245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    + en+  rq t++kR+ngi+KKA ELS+LCd+++ +++fs+ gk
  XP_004505413.1 23 KLENTNGRQATYAKRKNGIMKKATELSILCDIDIILLMFSPGGK 66
                    6799************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.2821466IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-261473IPR002100Transcription factor, MADS-box
CDDcd001206.57E-241567No hitNo description
SuperFamilySSF554557.33E-2415108IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-161636IPR002100Transcription factor, MADS-box
PfamPF003195.8E-182467IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-163651IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-165172IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MADFACWSPD HVNMGRVKLK IKKLENTNGR QATYAKRKNG IMKKATELSI LCDIDIILLM  60
FSPGGKPSLC RGRRGNFEEV IAKFAQLTPQ ERAKRKLESL EGLRKTFKKL DHNVNIQEFM  120
GASSQTIEDL SNHAKLLQIQ ISEIHERVSQ WTECDKISSV EQLGQMENSL RQSLNQIQTR  180
KETMKNQQIV SLQCNNQFNE MNIPFRMNTD QHLQPLSWIA NGDNQNIVLP EDSNLFLHKE  240
VEGSASSSFG SYASYLGSSG KTEISNSGPE SCVLSDMSSN APLRQQLNGQ FPYMPYNFNL  300
LNNLKFQPAA EINPHENPAD YHVNGSFEAP RQGYESNNHG WASTSGPCAV TMFDEHLYAQ  360
QPN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505413.10.0PREDICTED: floral homeotic protein FBP1-like isoform X1
SwissprotQ1PFA41e-105AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A151UBD70.0A0A151UBD7_CAJCA; MADS-box transcription factor 1
STRINGGLYMA07G35610.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.22e-83AGAMOUS-like 30